Suite2p Importer

You can load Suite2p output files to import ROIs into the current work environment. This places the Suite2p-derived ROIs onto the image that is currently open.

../../../_images/suite2p_importer.png

Video Tutorial

Script Usage

You can also use this module through the viewer console, or in the Script Editor instead of clicking buttons.

Example

 1# get the module, hide the GUI
 2s2p_importer = get_module('suite2p_importer', hide=True)
 3
 4# set the path to the dir containing the suite2p output files
 5s2p_importer.data.set_dir('/path/to/dir')
 6
 7# set the amount of neuropil contamination to subtract
 8s2p_importer.data.Fneu_sub = 0.7
 9
10# import the suite2p data into the current work environment
11s2p_importer.import_rois()
12
13# clear the data from the importer before importing another directory
14# this doesn't do anything to the viewer work environment, just clears the importer data
15s2p_importer.data.clear()