Overview

Mesmerize is a platform for the annotation and analysis of neuronal calcium imaging data. It encompasses the entire process of calcium imaging analysis from raw data to semi-final publication figures that are interactive, and aids in the creation of FAIR-functionally linked datasets. It is applicable for a broad range of experiments and is intended to be used by users with and without a programming background.

Welcome Window

Share your analysis pipelines and figures along with your publication

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The Viewer

Explore image sequences, and use various modules for pre-processing and signal-extraction. Annotate regions of interest with any relevant information. Map stimuli/behavior periods.

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CaImAn modules

Mesmerize contains front-end GUI modules for the CaImAn library. This makes it very easy for users without a programming background to use the library.

CaImAn Elastic Motion Correction

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CNMFE

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Batch Manager

Computationally intense procedures performed can be organized with the Mesmerize Batch Manager.

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Project Organization

Explore project data and create experimental groups.

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Data analysis - pyqtgraph programmable flowcharts.

Build your own analysis piplines using flowcharts.

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Interactive Plots

Create shareable interactive plots where the analysis history of every datapoint is traceable. Explore information associated with a datapoint, such as the spatial localization of its parent ROI and raw data.

Interactive Heatmaps

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Interactive Cross-correlation analysis

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Other types of plots: Beeswarm, Violins, KShape, Proportions, Scatter