Caiman HDF5 ImporterΒΆ

You can import HDF5 files containing CNMF results that were produced externally by Caiman. The ROIs produced by CNMF, 3D-CNMF or CNMFE will be imported into the current work environment and placed onto the image that is currently open.

../../../_images/caiman_hdf5_importer.png

You can also use this module through the viewer console, or in the Script Editor instead of clicking buttons.

Example

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# get the module, hide the GUI
caiman_importer = get_module('caiman_importer', hide=True)

# import the file
caiman_importer.import_file('/path/to/file.hdf5')